X-Git-Url: https://ruin.nu/git/?a=blobdiff_plain;f=src%2Fgenealgorithms.h;h=1d74e7130862188d4ff8e0ad57bf8a656e7d6023;hb=6ba92ada02bfbb04abb8a0c7a039ec63c7c9921e;hp=7f07d17f47476f617018e62494b7cb0ed9e738c6;hpb=e44303f027e957d05c9e9418fbd68171f3707599;p=germs.git

diff --git a/src/genealgorithms.h b/src/genealgorithms.h
index 7f07d17..1d74e71 100644
--- a/src/genealgorithms.h
+++ b/src/genealgorithms.h
@@ -24,17 +24,18 @@
 #include <vector>
 
 class GeneOrder;
+struct Component;
 
-struct Component{
-	Component(int b,int e,int s):begin(b),end(e),sign(s){}
-	bool operator==(const Component& c){
-		return begin == c.begin && end == c.end && sign == c.sign;
+
+struct Interval{
+	Interval(size_t f,size_t s,bool o = false):first(f),second(s),oriented(o){}
+	bool operator==(const Interval& i){
+		return first == i.first && second == i.second && oriented == i.oriented;
 	}
-	int begin;
-	int end;
-	int sign;
+	size_t first;
+	size_t second;
+	bool oriented;
 };
-typedef std::pair<size_t,size_t> Interval;
 
 /**
  * Returns the length of the longest increasing sequence and the longest