X-Git-Url: https://ruin.nu/git/?a=blobdiff_plain;f=src%2Fgenesorter.h;h=6ec4047cf006c25c92b0992ca189d59f94e07b9f;hb=HEAD;hp=4380e9957479625140f95c858f3245e54942731f;hpb=7e811915a713eeef44f03385a1fc1f74a5301c30;p=germs.git

diff --git a/src/genesorter.h b/src/genesorter.h
index 4380e99..6ec4047 100644
--- a/src/genesorter.h
+++ b/src/genesorter.h
@@ -25,6 +25,7 @@
 
 class SortAction;
 class GeneOrder;
+class Model;
 
 /**
  * Sorts genes
@@ -39,14 +40,17 @@ class GeneSorter{
 		 * Takes a GeneOrder, finds the actions to transform it into a sorted
 		 * permutation and returns the list with required actions.
 		 */
-		ActionList sort(const GeneOrder& go1);
+		ActionList sort(const GeneOrder& go1, const Model& m);
 
 		/**
 		 * Find the safe actions for this GeneOrder.
 		 */
 		ActionList safeActions(const GeneOrder& go1);
 
-		size_t scoreActions(const GeneOrder& go, SortAction& sa);
+		/**
+		 * Calculates the score for an action given a gene order
+		 */
+		size_t scoreAction(const GeneOrder& go, SortAction& sa);
 
 		~GeneSorter(){};
 };