INCLUDE(CheckIncludeFile)
INCLUDE(CheckIncludeFileCXX)

SET(CMAKE_VERBOSE_MAKEFILE OFF)

#ADD_DEFINITIONS(-Wall -O2)

#ADD_DEFINITIONS(-Wall -pedantic -g -D_GLIBCXX_DEBUG)
ADD_DEFINITIONS(-Wall -pedantic -g)

#INCLUDE(CheckCXXSourceCompiles)

INCLUDE_DIRECTORIES(.)
ADD_LIBRARY(GeneSort geneorder genealgorithms modelidentifier genesorter model
	models componenttree)

ADD_EXECUTABLE(germs main.cpp)

CHECK_INCLUDE_FILE("doublefann.h" HAVE_FANN)

IF (HAVE_FANN)
	SET(GENELIBS doublefann GeneSort)
ELSE(HAVE_FANN)
	INCLUDE_DIRECTORIES(. ${CMAKE_SOURCE_DIR}/fann/src/include)
	ADD_LIBRARY(doublefann ${CMAKE_SOURCE_DIR}/fann/src/doublefann.c)
	TARGET_LINK_LIBRARIES(GeneSort doublefann)
	SET(GENELIBS GeneSort)
ENDIF(HAVE_FANN)


CHECK_INCLUDE_FILE_CXX("tr1/memory" HAVE_TR1)

IF(HAVE_TR1)
	ADD_DEFINITIONS(-DHAVE_TR1)
ELSE(HAVE_TR1)
	CHECK_INCLUDE_FILE_CXX("boost/shared_ptr.hpp" HAVE_BOOST)
	IF(NOT HAVE_BOOST)
		MESSAGE(FATAL_ERROR "Neither Boost nor TR1 found, need a shared_ptr implementation")
	ENDIF(NOT HAVE_BOOST)
ENDIF(HAVE_TR1)

TARGET_LINK_LIBRARIES(germs ${GENELIBS})

SUBDIRS(test)