INCLUDE(CheckIncludeFile)
INCLUDE(CheckIncludeFileCXX)

SET(CMAKE_VERBOSE_MAKEFILE OFF)

#ADD_DEFINITIONS(-Wall -O2 -D__GTHREADS -D_REENTRANT
#	-D_POSIX_PTHREAD_SEMANTICS -pthread)

#ADD_DEFINITIONS(-Wall -pedantic -g -D_GLIBCXX_DEBUG)
ADD_DEFINITIONS(-Wall -pedantic -g -D__GTHREADS -D_REENTRANT
	-D_POSIX_PTHREAD_SEMANTICS -pthread)

#INCLUDE(CheckCXXSourceCompiles)

INCLUDE_DIRECTORIES(.)
ADD_LIBRARY(GeneSort geneorder genealgorithms modelidentifier genesorter model
	models componenttree threadgenesorter)

ADD_EXECUTABLE(germs main.cpp)

FIND_PACKAGE(Threads REQUIRED)
CHECK_INCLUDE_FILE("doublefann.h" HAVE_FANN)
SET(GENELIBS GeneSort ${CMAKE_THREAD_LIBS_INIT})

IF (HAVE_FANN)
	LIST(APPEND GENELIBS doublefann)
ELSE(HAVE_FANN)
	INCLUDE_DIRECTORIES(. ${CMAKE_SOURCE_DIR}/fann/src/include)
	ADD_LIBRARY(doublefann ${CMAKE_SOURCE_DIR}/fann/src/doublefann.c)
	TARGET_LINK_LIBRARIES(GeneSort doublefann)
ENDIF(HAVE_FANN)


CHECK_INCLUDE_FILE_CXX("tr1/memory" HAVE_TR1)

IF(HAVE_TR1)
	ADD_DEFINITIONS(-DHAVE_TR1)
ELSE(HAVE_TR1)
	CHECK_INCLUDE_FILE_CXX("boost/shared_ptr.hpp" HAVE_BOOST)
	IF(NOT HAVE_BOOST)
		MESSAGE(FATAL_ERROR "Neither Boost nor TR1 found, need a shared_ptr implementation")
	ENDIF(NOT HAVE_BOOST)
ENDIF(HAVE_TR1)

TARGET_LINK_LIBRARIES(germs ${GENELIBS})


SUBDIRS(test)