From: Michael Andreen <harv@ruin.nu>
Date: Tue, 30 Oct 2007 08:51:08 +0000 (+0100)
Subject: Introduce -i for only identifying the model, excluding sorting.
X-Git-Tag: v0.1~6
X-Git-Url: https://ruin.nu/git/?p=germs.git;a=commitdiff_plain;h=0b90077b65cab03d00ef8f8c761afc3593f1b386

Introduce -i for only identifying the model, excluding sorting.
---

diff --git a/src/main.cpp b/src/main.cpp
index d9bce2f..fe58138 100644
--- a/src/main.cpp
+++ b/src/main.cpp
@@ -20,10 +20,11 @@ int main(int argc, char** argv){
 	string ann = "default.ann";
 	Model model(0);
 	bool detectModel = true;
+	bool onlyIdentify = false;
 
 	//Parse command line arguments
 	int opt;
-	while ((opt = getopt(argc, argv, "m:n:h")) != -1) {
+	while ((opt = getopt(argc, argv, "im:n:h")) != -1) {
 		switch (opt) {
 			case 'm':
 				model = Model::modelFactory(optarg);
@@ -32,6 +33,9 @@ int main(int argc, char** argv){
 			case 'n':
 				ann = optarg;
 				break;
+			case 'i':
+				onlyIdentify = true;
+				break;
 			case 'h':
 				cout << "Usage: " << argv[0] << " [OPTION] [FILE]" << endl
 					<< endl << "  -m <model> Specifies which model to use for sorting: Whirl, X, Zipper, FatX or Cloud "
@@ -84,6 +88,9 @@ int main(int argc, char** argv){
 	//copy(go.begin(), go.end(), ostream_iterator<int>(cout, " "));
 	//cout << endl;
 
+	if (onlyIdentify){
+		return EXIT_SUCCESS;
+	}
 	//Sort
 	GeneSorter so;
 	GeneSorter::ActionList al = so.sort(go,model);