From: Michael Andreen <harv@ruin.nu>
Date: Tue, 14 Aug 2007 11:45:17 +0000 (+0000)
Subject: updated comments
X-Git-Tag: v0.1~24
X-Git-Url: https://ruin.nu/git/?p=germs.git;a=commitdiff_plain;h=8e617d91244bf6c8b22503850e10909fa2071c44

updated comments
---

diff --git a/src/main.cpp b/src/main.cpp
index 2e07495..d9bce2f 100644
--- a/src/main.cpp
+++ b/src/main.cpp
@@ -21,6 +21,7 @@ int main(int argc, char** argv){
 	Model model(0);
 	bool detectModel = true;
 
+	//Parse command line arguments
 	int opt;
 	while ((opt = getopt(argc, argv, "m:n:h")) != -1) {
 		switch (opt) {
@@ -47,6 +48,7 @@ int main(int argc, char** argv){
 		}
 	}
 
+	//Open file, or stdin
 	istream* in;
 	ifstream file;
 	if (optind == argc || *argv[optind] == '-'){
@@ -59,13 +61,14 @@ int main(int argc, char** argv){
 		}
 		in = &file;
 	}
-	//TODO: Parse
+
+	//Parse the gene order permutation
 	vector<Gene> g;
 	copy(istream_iterator<int>(*in), istream_iterator<int>(),
-		     back_inserter(g));   
+	     back_inserter(g));
 	GeneOrder go(g.begin(),g.end());
 
-	//TODO: Identify
+	//Identify the model
 	ModelIdentifier mi(ann);
 	priority_queue<pair<double,Model> > pq = mi.identify(go);
 	if (detectModel){
@@ -81,17 +84,17 @@ int main(int argc, char** argv){
 	//copy(go.begin(), go.end(), ostream_iterator<int>(cout, " "));
 	//cout << endl;
 
-	//TODO: Chose a sorter
+	//Sort
 	GeneSorter so;
-	//TODO: Sort
 	GeneSorter::ActionList al = so.sort(go,model);
 
+	//Print the result
 	double score = 0;
 	for (GeneSorter::ActionList::iterator sa = al.begin(); sa != al.end(); ++sa){
 		cout << "Action: " << sa->toString() << " model score: " << model.score(*sa,go) << endl;
 		score += model.score(*sa,go);
 	}
 	cout << "Avg score: " << score / al.size() << endl;
-	//TODO: Print result
+
 	return EXIT_SUCCESS;
 }