From 148a31960aeb2ba127ef4322a12ae3af28ef2988 Mon Sep 17 00:00:00 2001
From: Michael Andreen <harv@ruin.nu>
Date: Sun, 24 Jun 2007 12:15:43 +0000
Subject: [PATCH] nicer with size_t for cycles, they can't be negative anyway

---
 src/genealgorithms.cpp | 4 ++--
 src/genealgorithms.h   | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/genealgorithms.cpp b/src/genealgorithms.cpp
index 78b0f05..7f54109 100644
--- a/src/genealgorithms.cpp
+++ b/src/genealgorithms.cpp
@@ -66,8 +66,8 @@ struct FindP{
 };
 
 
-int countCycles(const GeneOrder& go){
-	int cycles = 0;
+size_t countCycles(const GeneOrder& go){
+	size_t cycles = 0;
 	set<size_t> marked;
 	vector<Interval> intervals = findIntervals(go);
 	vector<Interval> points = findIntervalsAtPoints(intervals);
diff --git a/src/genealgorithms.h b/src/genealgorithms.h
index 0158c35..b5ed95d 100644
--- a/src/genealgorithms.h
+++ b/src/genealgorithms.h
@@ -49,7 +49,7 @@ std::vector<std::vector<int> > robinsonSchensted(const GeneOrder& go);
 /**
  * Counts the number of cycles in the gene order.
  */
-int countCycles(const GeneOrder& go);
+size_t countCycles(const GeneOrder& go);
 
 /**
  * Finds the components in the gene order.
-- 
2.39.2