| 2007-12-19 |
Michael Andreen | More help output master v0.1 |
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| 2007-12-19 |
Michael Andreen | License and minor installation instructions |
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| 2007-12-19 |
Michael Andreen | Only build tests if we have cppunit available |
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| 2007-12-19 |
Michael Andreen | Check for TR1 or Boost |
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| 2007-12-19 |
Michael Andreen | Make it possible to build statically against the includ... |
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| 2007-12-05 |
Michael Andreen | add an option to print the permutation |
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| 2007-10-30 |
Michael Andreen | Introduce -i for only identifying the model, excluding... |
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| 2007-10-29 |
Michael Andreen | changed name to GERMS |
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| 2007-10-29 |
Michael Andreen | more ignores |
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| 2007-10-29 |
Michael Andreen | Small optimization in sort() |
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| 2007-09-14 |
Michael Andreen | Only headers and exclude tests + minor report update |
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| 2007-08-29 |
Michael Andreen | Added a Whirl model, which favors reversals, instead... |
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| 2007-08-29 |
Michael Andreen | DOC: more doxygen documentation |
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| 2007-08-28 |
Michael Andreen | bad testcase |
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| 2007-08-28 |
Michael Andreen | BUGFIX: forgot to set parent to 0 on child when removin... |
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| 2007-08-23 |
Michael Andreen | Added more doxygen documentation |
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| 2007-08-22 |
Michael Andreen | added .gitignore files |
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| 2007-08-16 |
Michael Andreen | calculate the proper distance, with hurdles |
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| 2007-08-16 |
Michael Andreen | shortBranches |
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| 2007-08-16 |
Michael Andreen | have all tests enabled |
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| 2007-08-16 |
Michael Andreen | count leaves |
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| 2007-08-16 |
Michael Andreen | make the componenttree a minimal unoriented tree |
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| 2007-08-15 |
Michael Andreen | more complete test |
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| 2007-08-15 |
Michael Andreen | inital commit of componenttree with associated changes |
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| 2007-08-14 |
Michael Andreen | updated comments |
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| 2007-08-14 |
Michael Andreen | possible to chose a model |
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| 2007-08-14 |
Michael Andreen | modelFactory method, to help create models |
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| 2007-08-14 |
Michael Andreen | scoring function for Zipper model |
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| 2007-08-13 |
Michael Andreen | don't really need print the gene order |
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| 2007-08-13 |
Michael Andreen | calculate the avg score for the model |
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| 2007-08-13 |
Michael Andreen | some comments |
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| 2007-08-03 |
Michael Andreen | give access to reverse action members, and calculate... |
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| 2007-08-03 |
Michael Andreen | a little more refactoring, name might just as well... |
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| 2007-08-03 |
Michael Andreen | genesorter now uses models to score actions, specific... |
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| 2007-08-03 |
Michael Andreen | started a refactoring with Model class to score differe... |
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| 2007-08-01 |
Michael Andreen | had a nice idea |
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| 2007-08-01 |
Michael Andreen | Only show models with positive score, and convert the... |
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| 2007-07-30 |
Michael Andreen | adding command line options |
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| 2007-06-30 |
Michael Andreen | a little performance tuning |
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| 2007-06-30 |
Michael Andreen | don't print as much |
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| 2007-06-27 |
Michael Andreen | toString for actions |
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| 2007-06-25 |
Michael Andreen | better main program |
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| 2007-06-24 |
Michael Andreen | cast to size_t instead of asuming unsigned long |
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| 2007-06-24 |
Michael Andreen | added a test case with hurdles |
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| 2007-06-24 |
Michael Andreen | renamed a function and removed some debug output |
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| 2007-06-24 |
Michael Andreen | sorting without hurdles seems to work |
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| 2007-06-24 |
Michael Andreen | minor change |
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| 2007-06-24 |
Michael Andreen | good to have a inversion distance function |
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| 2007-06-24 |
Michael Andreen | minor things |
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| 2007-06-24 |
Michael Andreen | nicer with size_t for cycles, they can't be negative... |
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| 2007-06-24 |
Michael Andreen | copy constructor and assignment constructor |
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| 2007-06-24 |
Michael Andreen | better if SortAction takes care of the shared_ptr,... |
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| 2007-06-24 |
Michael Andreen | we need a list of smart pointers |
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| 2007-06-24 |
Michael Andreen | setting up things for implementing the sorting |
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| 2007-06-21 |
Michael Andreen | ModelIdentifier::identify implemented and passes test |
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| 2007-06-21 |
Michael Andreen | initial commit of the modelidentifier files |
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| 2007-06-20 |
Michael Andreen | a little cleanup and minor fix |
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| 2007-06-20 |
Michael Andreen | findComponents implemented and passes test |
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| 2007-06-20 |
Michael Andreen | Forgot to update the comment |
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| 2007-06-20 |
Michael Andreen | findIntervalsAtPoitns is now O(n) |
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| 2007-06-20 |
Michael Andreen | findIntervals is now O(n) |
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| 2007-06-20 |
Michael Andreen | moved a function and added comment |
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| 2007-06-19 |
Michael Andreen | first point in points is now a dummy so indexes matches... |
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| 2007-06-19 |
Michael Andreen | countCycles implemented and passess test |
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| 2007-06-19 |
Michael Andreen | better use debug information at this stage |
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| 2007-06-19 |
Michael Andreen | findIntervalAtPoints implemnted and passes test |
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| 2007-06-19 |
Michael Andreen | findIntervals implemented and passing test |
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| 2007-06-19 |
Michael Andreen | adding countCycles, findComponents, findIntervals decla... |
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| 2007-06-18 |
Michael Andreen | longest increasing and decreasing subsequences |
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| 2007-06-18 |
Michael Andreen | robinson schensted algorithm implemented |
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| 2007-06-18 |
Michael Andreen | more documentation |
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| 2007-06-18 |
Michael Andreen | GeneOrder::reverse implemented |
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| 2007-06-18 |
Michael Andreen | some cleanup, documentation, begin() and end() methods |
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| 2007-06-14 |
Michael Andreen | cmake testing |
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| 2007-06-14 |
Michael Andreen | qt tester optional |
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| 2007-06-14 |
Michael Andreen | need the dir too |
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| 2007-06-14 |
Michael Andreen | library path is good |
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| 2007-06-14 |
Michael Andreen | assignment works |
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| 2007-06-14 |
Michael Andreen | copy constructor works |
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| 2007-06-14 |
Michael Andreen | constructor for GeneOrder done |
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| 2007-06-14 |
Michael Andreen | put executables in the right place |
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| 2007-06-14 |
Michael Andreen | need a main file |
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| 2007-06-14 |
Michael Andreen | a bit nicer |
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| 2007-06-14 |
Michael Andreen | some more changes |
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| 2007-06-14 |
Michael Andreen | some initial tests |
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| 2007-06-14 |
Michael Andreen | lower case is nicer |
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| 2007-06-14 |
Michael Andreen | link with fann |
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| 2007-06-14 |
Michael Andreen | some build tools |
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| 2007-06-12 |
Michael Andreen | some initial commits |
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projects / germs.git / shortlog