1 /***************************************************************************
2 * Copyright (C) 2006 by Michael Andreen *
3 * andreen@student.chalmers.se *
5 * This program is free software; you can redistribute it and/or modify *
6 * it under the terms of the GNU General Public License as published by *
7 * the Free Software Foundation; either version 2 of the License, or *
8 * (at your option) any later version. *
10 * This program is distributed in the hope that it will be useful, *
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of *
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
13 * GNU General Public License for more details. *
15 * You should have received a copy of the GNU General Public License *
16 * along with this program; if not, write to the *
17 * Free Software Foundation, Inc., *
18 * 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA *
19 ***************************************************************************/
21 #ifndef __GENESORTER_H__
22 #define __GENESORTER_H__
33 * \author Michael Andreen
37 typedef std::vector<SortAction> ActionList;
40 * Takes a GeneOrder, finds the actions to transform it into a sorted
41 * permutation and returns the list with required actions.
43 ActionList sort(const GeneOrder& go1, const Model& m);
46 * Find the safe actions for this GeneOrder.
48 ActionList safeActions(const GeneOrder& go1);
51 * Calculates the score for an action given a gene order
53 size_t scoreAction(const GeneOrder& go, SortAction& sa);