1 /***************************************************************************
2 * Copyright (C) 2006 by Michael Andreen *
3 * andreen@student.chalmers.se *
5 * This program is free software; you can redistribute it and/or modify *
6 * it under the terms of the GNU General Public License as published by *
7 * the Free Software Foundation; either version 2 of the License, or *
8 * (at your option) any later version. *
10 * This program is distributed in the hope that it will be useful, *
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of *
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
13 * GNU General Public License for more details. *
15 * You should have received a copy of the GNU General Public License *
16 * along with this program; if not, write to the *
17 * Free Software Foundation, Inc., *
18 * 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA *
19 ***************************************************************************/
35 * Abstraction of a model.
37 * Handles scoring of specific actions on gene orders.
41 typedef std::tr1::shared_ptr<Models::ModelImpl> ModelPointer;
44 * Constructs a new model.
46 * \param model The actual model implementation. This model takes
47 * ownership of the new allocated implementation and will delete it.
49 Model(Models::ModelImpl* model);
52 * Gives the score for the action on a given gene order.
53 * A better match for this model gives a higher score.
55 double score(const SortAction& sa, const GeneOrder& go) const;
58 * The name for the model used.
60 const char* name() const;
63 * Creates a model from a name.
65 static Model modelFactory(const std::string& name);
72 bool operator<(const Model& lh,const Model& rh);