CPPUNIT_TEST_SUITE( TESTNAME );
CPPUNIT_TEST( testRobinsonSchensted );
CPPUNIT_TEST( testLongestSequences );
+ CPPUNIT_TEST( testFindIntervals );
+ CPPUNIT_TEST( testFindIntervalsAtPoints );
+ CPPUNIT_TEST( testCountCycles );
+ CPPUNIT_TEST( testFindComponents );
CPPUNIT_TEST_SUITE_END();
protected:
GeneOrder go2(_validPerm2.begin(),_validPerm2.end());
p = longestSequences(go2);
- int first[] = {0,1,3,5,6,7,9};
- int second[] = {2,4,8};
CPPUNIT_ASSERT_EQUAL(7,p.first);
CPPUNIT_ASSERT_EQUAL(2,p.second);
}
+ void testFindIntervals (){
+ GeneOrder go(_validPerm.begin(),_validPerm.end());
+ vector<pair<size_t,size_t> > v = findIntervals(go);
+ CPPUNIT_ASSERT_EQUAL(4ul,v.size());
+ Interval go10(1,1);
+ Interval go12(3,3);
+ CPPUNIT_ASSERT(go10 == v[0]);
+ CPPUNIT_ASSERT(go12 == v[2]);
+
+ GeneOrder go2(_validPerm3.begin(),_validPerm3.end());
+ v = findIntervals(go2);
+ CPPUNIT_ASSERT_EQUAL(16ul,v.size());
+ Interval go20(1,2);
+ Interval go22(4,2);
+ Interval go215(8,16);
+ CPPUNIT_ASSERT(go20 == v[0]);
+ CPPUNIT_ASSERT(go22 == v[2]);
+ CPPUNIT_ASSERT(go215 == v[15]);
+ }
+ void testFindIntervalsAtPoints (){
+ GeneOrder go(_validPerm.begin(),_validPerm.end());
+ vector<Interval> v = findIntervals(go);
+ v = findIntervalsAtPoints(v);
+ CPPUNIT_ASSERT_EQUAL(5ul,v.size());
+ Interval go10(0,0);
+ Interval go12(2,2);
+ CPPUNIT_ASSERT(go10 == v[1]);
+ CPPUNIT_ASSERT(go12 == v[3]);
+
+ GeneOrder go2(_validPerm3.begin(),_validPerm3.end());
+ v = findIntervals(go2);
+ v = findIntervalsAtPoints(v);
+ CPPUNIT_ASSERT_EQUAL(17ul,v.size());
+ Interval go20(0,3);
+ Interval go22(1,1);
+ CPPUNIT_ASSERT(go20 == v[1]);
+ CPPUNIT_ASSERT(go22 == v[3]);
+ }
+ void testCountCycles (){
+ GeneOrder go(_validPerm.begin(),_validPerm.end());
+ int c = countCycles(go);
+ CPPUNIT_ASSERT_EQUAL(4,c);
+
+ GeneOrder go2(_validPerm3.begin(),_validPerm3.end());
+ c = countCycles(go2);
+ CPPUNIT_ASSERT_EQUAL(6,c);
+ }
+
+ void testFindComponents (){
+ GeneOrder go(_validPerm.begin(),_validPerm.end());
+ vector<Component> v = findComponents(go);
+ CPPUNIT_ASSERT_EQUAL(4ul,v.size());
+ Component go10(0,1,0);
+ Component go11(1,2,0);
+ Component go12(2,3,0);
+ Component go13(3,4,0);
+ CPPUNIT_ASSERT(go10 == v[0]);
+ CPPUNIT_ASSERT(go11 == v[1]);
+ CPPUNIT_ASSERT(go12 == v[2]);
+ CPPUNIT_ASSERT(go13 == v[3]);
+
+ GeneOrder go2(_validPerm3.begin(),_validPerm3.end());
+ v = findComponents(go2);
+ CPPUNIT_ASSERT_EQUAL(6ul,v.size());
+ Component go20(1,2,0);
+ Component go21(0,4,0);
+ Component go22(4,7,1);
+ Component go23(-15,-12,-1);
+ Component go24(-12,-9,-1);
+ Component go25(7,16,0);
+ CPPUNIT_ASSERT(go20 == v[0]);
+ CPPUNIT_ASSERT(go21 == v[1]);
+ CPPUNIT_ASSERT(go22 == v[2]);
+ CPPUNIT_ASSERT(go23 == v[3]);
+ CPPUNIT_ASSERT(go24 == v[4]);
+ CPPUNIT_ASSERT(go25 == v[5]);
+ }
};