};
-int countCycles(const GeneOrder& go){
- int cycles = 0;
+size_t countCycles(const GeneOrder& go){
+ size_t cycles = 0;
set<size_t> marked;
vector<Interval> intervals = findIntervals(go);
vector<Interval> points = findIntervalsAtPoints(intervals);
os[Sdir.top()] = (os[Sdir.top()] == os[s] ? os[s] : 0);
s = Sdir.top();
}
- if (go[i] > 0 && dir[i] == dir[s] && i - s == p[i] - p[s])
+ if (go[i] > 0 && dir[i] == dir[s] && static_cast<Gene>(i - s) == p[i] - p[s])
components.push_back(Component(p[s],p[i],(s+1 == i ? 0 : os[s])));
-
//Reverse
if (p[i-1] < p[i])
Mrev.push(p[i-1]);
os[Srev.top()] *= (os[Srev.top()] == os[s] ? 1 : 0);
s = Srev.top();
}
- if (go[i] < 0 && rev[i] == rev[s] && i - s == p[s] - p[i])
- components.push_back(Component(-p[s],-p[i],os[s]));
+ if (go[i] < 0 && rev[i] == rev[s] && static_cast<Gene>(i - s) == p[s] - p[i])
+ components.push_back(Component(-p[s],-p[i],(s+1 == i ? 0 : os[s])));
//Update stacks
if (go[i] > 0)