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2007-07-30	Michael Andreen	adding command line options	commit \| commitdiff \| tree
2007-06-30	Michael Andreen	a little performance tuning	commit \| commitdiff \| tree
2007-06-30	Michael Andreen	don't print as much	commit \| commitdiff \| tree
2007-06-27	Michael Andreen	toString for actions	commit \| commitdiff \| tree
2007-06-25	Michael Andreen	better main program	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	cast to size_t instead of asuming unsigned long	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	added a test case with hurdles	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	renamed a function and removed some debug output	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	sorting without hurdles seems to work	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	minor change	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	good to have a inversion distance function	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	minor things	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	nicer with size_t for cycles, they can't be negative...	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	copy constructor and assignment constructor	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	better if SortAction takes care of the shared_ptr,...	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	we need a list of smart pointers	commit \| commitdiff \| tree
2007-06-24	Michael Andreen	setting up things for implementing the sorting	commit \| commitdiff \| tree
2007-06-21	Michael Andreen	ModelIdentifier::identify implemented and passes test	commit \| commitdiff \| tree
2007-06-21	Michael Andreen	initial commit of the modelidentifier files	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	a little cleanup and minor fix	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	findComponents implemented and passes test	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	Forgot to update the comment	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	findIntervalsAtPoitns is now O(n)	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	findIntervals is now O(n)	commit \| commitdiff \| tree
2007-06-20	Michael Andreen	moved a function and added comment	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	first point in points is now a dummy so indexes matches...	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	countCycles implemented and passess test	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	better use debug information at this stage	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	findIntervalAtPoints implemnted and passes test	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	findIntervals implemented and passing test	commit \| commitdiff \| tree
2007-06-19	Michael Andreen	adding countCycles, findComponents, findIntervals declaratio...	commit \| commitdiff \| tree
2007-06-18	Michael Andreen	longest increasing and decreasing subsequences	commit \| commitdiff \| tree
2007-06-18	Michael Andreen	robinson schensted algorithm implemented	commit \| commitdiff \| tree
2007-06-18	Michael Andreen	more documentation	commit \| commitdiff \| tree
2007-06-18	Michael Andreen	GeneOrder::reverse implemented	commit \| commitdiff \| tree
2007-06-18	Michael Andreen	some cleanup, documentation, begin() and end() methods	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	cmake testing	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	qt tester optional	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	need the dir too	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	library path is good	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	assignment works	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	copy constructor works	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	constructor for GeneOrder done	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	put executables in the right place	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	need a main file	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	a bit nicer	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	some more changes	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	some initial tests	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	lower case is nicer	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	link with fann	commit \| commitdiff \| tree
2007-06-14	Michael Andreen	some build tools	commit \| commitdiff \| tree
2007-06-12	Michael Andreen	some initial commits	commit \| commitdiff \| tree

GEne order Rearrangement Model Selector

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