Added progress information for the search

[germs.git] / src / CMakeLists.txt

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 7367530d3f2c90905c8614e3ef8ef69c2d20eb9a..6b5217e9497e5abd6cd2e4e3a93d5a02a608841b 100644 (file)
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1,10 +1,48 @@
-PROJECT(GeneSort)
+INCLUDE(CheckIncludeFile)
+INCLUDE(CheckIncludeFileCXX)
 
 SET(CMAKE_VERBOSE_MAKEFILE OFF)
 
-ADD_DEFINITIONS(-Wall -O2)
+#ADD_DEFINITIONS(-Wall -O2 -D__GTHREADS -D_REENTRANT
+#      -D_POSIX_PTHREAD_SEMANTICS -pthread)
+
+#ADD_DEFINITIONS(-Wall -pedantic -g -D_GLIBCXX_DEBUG)
+ADD_DEFINITIONS(-Wall -pedantic -g -D__GTHREADS -D_REENTRANT
+       -D_POSIX_PTHREAD_SEMANTICS -pthread)
+
+#INCLUDE(CheckCXXSourceCompiles)
 
 INCLUDE_DIRECTORIES(.)
-ADD_EXECUTABLE(../bin/genesort main.cpp GeneOrder.cpp)
+ADD_LIBRARY(GeneSort geneorder genealgorithms modelidentifier genesorter model
+       models componenttree threadgenesorter)
+
+ADD_EXECUTABLE(germs main.cpp)
+
+FIND_PACKAGE(Threads REQUIRED)
+CHECK_INCLUDE_FILE("doublefann.h" HAVE_FANN)
+SET(GENELIBS GeneSort ${CMAKE_THREAD_LIBS_INIT})
+
+IF (HAVE_FANN)
+       LIST(APPEND GENELIBS doublefann)
+ELSE(HAVE_FANN)
+       INCLUDE_DIRECTORIES(. ${CMAKE_SOURCE_DIR}/fann/src/include)
+       ADD_LIBRARY(doublefann ${CMAKE_SOURCE_DIR}/fann/src/doublefann.c)
+       TARGET_LINK_LIBRARIES(GeneSort doublefann)
+ENDIF(HAVE_FANN)
+
+
+CHECK_INCLUDE_FILE_CXX("tr1/memory" HAVE_TR1)
+
+IF(HAVE_TR1)
+       ADD_DEFINITIONS(-DHAVE_TR1)
+ELSE(HAVE_TR1)
+       CHECK_INCLUDE_FILE_CXX("boost/shared_ptr.hpp" HAVE_BOOST)
+       IF(NOT HAVE_BOOST)
+               MESSAGE(FATAL_ERROR "Neither Boost nor TR1 found, need a shared_ptr implementation")
+       ENDIF(NOT HAVE_BOOST)
+ENDIF(HAVE_TR1)
+
+TARGET_LINK_LIBRARIES(germs ${GENELIBS})
+
 
-TARGET_LINK_LIBRARIES(../bin/genesort doublefann)
+SUBDIRS(test)