src/main.cpp

   1 #include <iostream>
   2 #include <vector>
   3 #include <queue>
   4 #include <iterator>
   5 #include <fstream>
   6
   7 using namespace std;
   8
   9 #include <unistd.h>
  10
  11 #include "geneorder.h"
  12 #include "modelidentifier.h"
  13 #include "genesorter.h"
  14 #include "sortaction.h"
  15
  16 typedef pair<ModelIdentifier::Model,double> modelpair;
  17
  18 int main(int argc, char** argv){
  19
  20         string ann = "default.ann";
  21
  22         int opt;
  23         while ((opt = getopt(argc, argv, "n:h")) != -1) {
  24                 switch (opt) {
  25                         case 'n':
  26                                 ann = optarg;
  27                                 break;
  28                         case 'h':
  29                                 cout << "Usage: " << argv[0] << " [OPTION] [FILE]" << endl
  30                                         << endl << "  -n <ann>   Specifies which artificial neural network to use for identification. '" << ann << "' is used by default"
  31                                         << endl << "  -h         Prints this help message"
  32                                         << endl << endl
  33                                         << "With no FILE, or if FILE is '-', stdin will be used"
  34                                         << endl;
  35                                 exit(EXIT_SUCCESS);
  36                                 break;
  37                         default: /* '?' */
  38                                 cerr << "Usage:  " << argv[0] << " [-n <ann>] [-h] [FILE]" << endl;
  39                                 exit(EXIT_FAILURE);
  40                 }
  41         }
  42
  43         istream* in;
  44         ifstream file;
  45         if (optind == argc || *argv[optind] == '-'){
  46                 in = &cin;
  47         }else{
  48                 file.open(argv[optind]);
  49                 if (file.fail()){
  50                         cerr << "Could not open file: '" << argv[optind] << "'" << endl;
  51                         exit(EXIT_FAILURE);
  52                 }
  53                 in = &file;
  54         }
  55         //TODO: Parse
  56         vector<Gene> g;
  57         copy(istream_iterator<int>(*in), istream_iterator<int>(),
  58                      back_inserter(g));
  59         GeneOrder go(g.begin(),g.end());
  60
  61         //TODO: Identify
  62         ModelIdentifier mi(ann);
  63         map<ModelIdentifier::Model,double> scores = mi.identify(go);
  64         for (map<ModelIdentifier::Model,double>::iterator m = scores.begin();
  65                         m != scores.end(); ++m){
  66                 cout << "Model: " << m->first << " score: " << m->second << endl;
  67         }
  68
  69         //TODO: Chose a sorter
  70         GeneSorter so;
  71         //TODO: Sort
  72         GeneSorter::ActionList al = so.sort(go);
  73         //TODO: Print result
  74         return EXIT_SUCCESS;
  75 }